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SNP selected for the use of genotyping with both the Holstein and Jersey DNA samples

 
Holstein
Jersey
SNP name BTA1 Call rate2 MAF3 Call rate2 MAF3
ARS-BFGL-NGS-12933 1 0.992 0.412 0.979 0.457
BTB-01601989 2 0.989 0.430 0.980 0.497
BTB-01327945 4 0.989 0.437 0.982 0.401
BTB-01133499 6 0.987 0.442 0.979 0.471
Hapmap43946-BTA-80204 7 0.989 0.488 0.987 0.412
Hapmap33532-BTA-84282 9 0.992 0.484 0.980 0.483
Hapmap23524-BTC-065402 14 0.987 0.444 0.981 0.477
ARS-BFGL-BAC-35394 15 0.984 0.469 0.984 0.451
ARS-BFGL-NGS-1152 16 0.989 0.445 0.981 0.489
BTB-00682000 17 0.981 0.424 0.980 0.425
Hapmap51593-BTA-42524 18 0.995 0.450 0.980 0.478
Hapmap44079-BTA-45543 19 0.981 0.440 0.979 0.476
ARS-BFGL-NGS-110086 20 0.992 0.488 0.980 0.409
BTB-01303828 21 0.981 0.452 0.980 0.449
Hapmap42246-BTA-54605 22 0.989 0.481 0.979 0.457
ARS-BFGL-NGS-89490 23 0.995 0.433 0.980 0.473
Hapmap41303-BTA-58461 24 1.000 0.495 0.981 0.416
Hapmap30460-BTC-059446 25 0.992 0.438 0.979 0.449
BTB-00921095 26 0.992 0.391 0.980 0.478
ARS-BFGL-NGS-56644 27 0.981 0.456 0.978 0.497
1BTA = Bos taurus chromosome.
2Proportion of samples successfully genotyped for the SNP in previous studies (Alpay et al. 2014; Zare et al. 2014).
3MAF = minor allele frequency observed in previous studies (Alpay et al. 2014; Zare et al. 2014).